生信软件工具整理
说到生信，最常用的还是r语言，但仅靠r语言还不够完成分析，需要用到很多软件
| name | lastest_version | links |
|---|---|---|
| MEGAHIT | v1.2.9 | github |
| SOAPaligner | ||
| PICRUSt2 | v2.5.3 | github |
| CD-HIT | v4.8.1 | github |
| MEGA | v11 | MEGA 11 64-bit |
| seqkit | v2.9.0 | github |
| seqtk | v1.4 | github |
| mothur | v1.48.2 | github |
| BLAST | ||
| usearch | usearch 32-bit | |
| cytoscape | v3.10.3 | github |
| TBtools2 | v2.138 | 奶牛快传 |
| FastTree | v2.1.11 | 官网 |
| Prodigal | v2.6.3 | github |
| Diamond | v2.1.10 | github |
| kraken2 | v2.1.3 | github |
| GraPhlAn |
This post is licensed under CC BY 4.0 by the author.